May 13, 2012 · From the point of view of biogeochemistry, manure is a complex of organic matter containing minor minerals. When manure is excreted by animals, it undergoes a series of reactions such as decomposition, hydrolysis, ammonia volatilization, nitrification, denitrification, fermentation etc., from which carbon dioxide (CO2), nitrous oxide (N2O), methane (CH4) and ammonia (NH3) can be produced